VolcaNoseR - Exploring volcano plots

Aesthetics

Selection & Annotation of hits

Transformation & Scaling

Labels

iPlot

Data upload

Data of differentially expressed genes in livers of mice on a high-fat-high-cholesterol diet - from figure 4C of Becares et al (2019): https://doi.org/10.1016/j.celrep.2018.12.094


Data of potential interactors of Cdc42 - from Figure 9A of Gillingham et al (2019): https://doi.org/10.7554/eLife.45916.001


Select X & Y variables

Transformation



About

There are currently

            session(s) connected to this app.
          

Data as provided

Volcano Plot

Download pdf-file Download png-file

Top hits (based on Manhattan distance from origin)

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About

About VolcaNoseR

The VolcaNoseR web app is a dedicated tool for exploring and plotting Volcano Plots. Users can explore the data with a pointer (cursor) to see information of individual datapoints. The threshold for the effect size (fold change) or significance can be dynamically adjusted. The plot can be annotated to show genes/proteins based on their top ranking or based on user input

The plot can be saved as a PNG file or a PDF file, which can be opened and edited with Adobe Illustrator to allow for fine adjustments of the lay-out.

Contact

VolcaNoseR is created and maintained by Joachim Goedhart
Bug reports and feature requests can be communicated in several ways:

Source

Source code is available at github/JoachimGoedhart

Credits

There are several Shiny apps for Volcano plots that have served as a source of inspiration:

What else?

Find our other dataViz apps at https://huygens.science.uva.nl